User profiles for "author:Peter Murakami"

Peter Murakami

Biostatistician
Verified email at jhu.edu
Cited by 7202

Differential methylation of tissue-and cancer-specific CpG island shores distinguishes human induced pluripotent stem cells, embryonic stem cells and fibroblasts

A Doi, IH Park, B Wen, P Murakami, MJ Aryee… - Nature …, 2009 - nature.com
Induced pluripotent stem (iPS) cells are derived by epigenetic reprogramming, but their DNA
methylation patterns have not yet been analyzed on a genome-wide scale. Here, we find …

Comprehensive methylome map of lineage commitment from haematopoietic progenitors

H Ji, LIR Ehrlich, J Seita, P Murakami, A Doi, P Lindau… - Nature, 2010 - nature.com
Epigenetic modifications must underlie lineage-specific differentiation as terminally
differentiated cells express tissue-specific genes, but their DNA sequence is unchanged …

Bump hunting to identify differentially methylated regions in epigenetic epidemiology studies

AE Jaffe, P Murakami, H Lee, JT Leek… - International journal …, 2012 - academic.oup.com
Background During the past 5 years, high-throughput technologies have been successfully
used by epidemiology studies, but almost all have focused on sequence variation through …

Personalized epigenomic signatures that are stable over time and covary with body mass index

AP Feinberg, RA Irizarry, D Fradin, MJ Aryee… - Science translational …, 2010 - science.org
The epigenome consists of non–sequence-based modifications, such as DNA methylation,
that are heritable during cell division and that may affect normal phenotypes and …

Cytomegalovirus infection and the risk of mortality and frailty in older women: a prospective observational cohort study

GC Wang, WHL Kao, P Murakami… - American journal of …, 2010 - academic.oup.com
Cytomegalovirus (CMV), a prevalent pathogen, causes severe disease in
immunocompromised humans. However, present understanding is limited regarding the …

A single institution's 26-year experience with nonfunctional pancreatic neuroendocrine tumors: a validation of current staging systems and a new prognostic …

TA Ellison, CL Wolfgang, C Shi, JL Cameron… - Annals of …, 2014 - journals.lww.com
Objective: To validate the 2010 American Joint Committee on Cancer (AJCC) and 2006
European Neuroendocrine Tumor Society (ENETS) tumor staging systems for pancreatic …

[HTML][HTML] Genome-wide DNA methylation scan in major depressive disorder

S Sabunciyan, MJ Aryee, RA Irizarry, M Rongione… - PloS one, 2012 - journals.plos.org
While genome-wide association studies are ongoing to identify sequence variation
influencing susceptibility to major depressive disorder (MDD), epigenetic marks, such as …

Cognitive improvement during continuous sedation in critically ill, awake and responsive patients: the Acute Neurological ICU Sedation Trial (ANIST)

MA Mirski, JJ Lewin, S LeDroux, C Thompson… - Intensive care …, 2010 - Springer
Introduction Most anxiolytics and sedative regimens in the intensive care unit (ICU) impair
intellectual function, reducing patient autonomy, and often add to patient morbidity. Using an …

Associations between safety culture and employee engagement over time: a retrospective analysis

ELD Biddison, L Paine, P Murakami… - BMJ quality & …, 2016 - qualitysafety.bmj.com
With the growth of the patient safety movement and development of methods to measure
workforce health and success have come multiple modes of assessing healthcare worker …

[HTML][HTML] Assessing affymetrix GeneChip microarray quality

MN McCall, PN Murakami, M Lukk, W Huber… - BMC …, 2011 - Springer
Background Microarray technology has become a widely used tool in the biological
sciences. Over the past decade, the number of users has grown exponentially, and with the …